With the rapid development of big data information technology, the importance of scientific research data in Colleges and universities has become increasingly prominent. Scientific researchers and scientific research management urgently need to rely on scientific research management system to collect, count and analyze data, to meet the needs of business management and various statistical data of scientific research departments. In view of the current situation of the scientific research management system in private colleges and universities, this paper combs out the existing problems, and puts forward corresponding countermeasures and suggestions, to provide important reference for the research and development and design of the scientific research management system in private colleges and universities.